Your files is almost useless. We can guess from some regular log fragments that you have problems with 135-tooth sensing. Note regular missing signals after camsync. 96msec cam period - around 1250rpms. Just guess.
It is possible to get more usable trigger logs with highest communications baud rate.
Anyway first sign of errors is trigger error flag presence in .vemslog.
If you have this, most efficient tool for further diagnostics is oscilloscope.
Before deeper diagnostics you can try to move sesnor together with little modified bracket to rear. Sometimes it helps.
Gints