Why did you have to do the procedure with the "bootloader & terminal & firmware upload" again ?
You already had 1.1.81 firmware uploaded to the ECU, right? Why upload again ?
What follows has nothing to do with why you created the thread in the first place, but we can continue to discuss..
Make the triggerlog at cranking rpm (~ 200 rpm). Press WOT to use flood clear to disable the injectors, and then crank the engine 4-5 seconds.
If you make it at idle (1000 rpm) then the tooth frequency is too high, communication speed to the tuning laptop/computer is too low to handle it, and data will be missed. VemsTune should tell you this is happening, but it doesn't - maybe in the future.
In case you did make the triggerlog while cranking the engine, from what I can see, at times you have a total lack of signal from the primary trigger. No need for an oscilloscope to tell you that.
Is the sensor of Hall or VR type ?
If Hall, what voltage source do you feed the sensor?
Which pin on the ECU? You should use EC36-pin28 (not 29 which is TPS only).