UPDATE:
Reconfigured the outputs and have spark at all the cylinders now. Have configured them according to the firing order. It sounds like its out but correct according to the wiki. It back fires. I am still learning the system. I will go back and check the offset.
To answer your questions:
cyl1 AANpin1, EC18pin11 StepperD
cyl2 AANpin2, EC18pin5 StepperC
cyl4 AANpin20, EC18pin10 StepperB
cyl5 AANpin21, EC18pin4 StepperA
cyl3 AANpin23, EC36pin11 ignch4
Firmware 1.1.27 and using Megatune
Any suggestions from this point would be appreciated.
Thanks