When asking for technical help at the very least let us know the version of firmware you are running.Cliff's Calibration (Mapping) Guide is a MUST READ: http://www.vemssupport.com/forum/index.php/topic,97.0.html
IGBTs themselves do not put out a voltage so you should be fine. But as always make sure that supplies are fused according to specification, and start with low charge times to limit the amount of power in the system.