Save your config(msq) with megatune. Make two copies. Open it(first copie) with wordpad or something like that and find confswith
change to this if you use ch7
<constant name="confswitch">195</constant>
<constant name="confswitch_bits">"7"</constant>
if you use ch6 to this
<constant name="confswitch">194</constant>
<constant name="confswitch_bits">"6"</constant>
Then open second copie(msq) and again find confswiht and change to this(for ch7)
<constant name="confswitch">215</constant>
<constant name="confswitch_bits">"7"</constant>
Now you have two config(first is for slot0 and second for slot1).
Upload first config to vems, exit megatune, change switch to short analog channel to ground(slot1), turn on megatune and upload second config. Now you can tune individual each config(slot0, slot1). But if you change slot you must close and start again megatune.