You're correct in all your assumptions.
One fuse per coil 7.5A gives the IGBTs safety head room.
Keep to 2.0ms and see if you get any misfire issues at high boost - if you can find a current clamp for an oscilloscope you could measure the coil charge accurately, if we're keeping it Ghetto though the rules are: keep an eye on the coil temps when increasing dwell, watch for misfires at high load/boost when decreasing.
Pairing ignition is done with the Cylinders that are at TDC together, 1 5 3 | 6 2 4 -> 1&6 5&2 3&4
Dual out is for COPs it fires: Coil00&01, 02&03, 04&05, 06&07