A few years ago I was playing with these ancient injectors and they seemed to be very hard to tune with VEMS (although it was the low voltage pwm flyback strategy those days).
Then we were going for modern injectors double this size, and everything got much better suddenly: idle quality, throttle response, economy.
If my memory don't fail, these engines were running very lean in stock form, I mean 1.03-1.05 lambda from idle to cruise, and even on low rpm/boost, and hardly getting into the 0.8x range at high rpms (and 0.6-0.7 bar of boost), but relying on knock sensors.
Looking at your lambda values in the log file it seems very sluggish to me, the "resolution" in time seems very poor, I used to see much smoother graphs almost like your MAP or RPM signal looks like, without the lean glitches you have very often.
It should be very hard to tune VE based on such a feedback, and I'd forget automated tune based on such logs, but correct this problem first.