Did you fix the trigger wire shield?
Some coils have a shield that needs proper grounding. Wasted spark coils are usually not built that way.
In OEM harnesses where the ECU has built-in igniters the wires for grounding the coils are shielded, I don't think that will help here.
Is the engine properly grounded? I recommend at least two places, one at the starter and the other near the generator.
It could be a lot of things, you have to try a few before you crack this. Swapping coils and spark plug wires would be a good start.
Try the Bosch coil, I once had a customer with a Audi 3B engine and used (ebay) 034 passive coils, those went into the trash bin after having massive issues with noise. The VAG 60-2 crank seal trigger with Hall sensor was used on that engine, it still caused problems with the signal. Not saying 034 coils are bad, just be critical about the condition of everything unknown.