The prime pulse only happens when the ECU boots up, the pulsewidth gauge shows the cranking pulsewidth. Nothing strange about that. If you use different injector cranking divider, simultaneous or individual firing, you will change what the gauge reads. Please see the calculation grid gauge for the fuel calc to understand the steps involved (easy to bring up in any gauge group in VemsTune).
I don't know what you mean by "VE 62" and "start at 100". You define what VE the engine has at the cranking rpm, a good baseline here is to use what the engine needs in the VE table at 100 kPa and lowest possible idle rpm. The cranking enrichment table is coolant temperature based, a warm engine normally needs no enrichment which is the 100% baseline.
If the engine ran with 1.1.78 and doesn't run with 1.1.84, look over the secondary trigger settings. There are new settings that determine what an acceptable position is for the secondary trigger, and what action the system takes if it detects an error. Please set max/min to the lowest/highest value and the action to "default" to get the previous behaviour (= do nothing in case of error).
It should be pretty obvious if you have trigger errors, lights are flashing and visible in a datalog as well.