The most likely option looks to be to swap the ignition output around:
from:0= I259-3, 1= I259-2, 2= I259-3, 3= I259-2,
to 0= I259-2, 1= I259-3, 2= I259-2, 3= I259-3.
My old settings of ignition output 0 = I259-3 (pin 36) and 1= I259-2 (pin 34), is this to be expected as part of the change in firmware? I'm more comfortable changing settings if it's a known difference between the two versions, what I don't want to do is start changing something that might not be related.
Would changing the table order from 0,18,0,18 to 18,0,18,0 have the same effect as this wasn't defined in the previous config?